Hi there, I have understood your concern and I will suggest you the best possible treatment options.
First of all do not panic.
Please start with your
thyroid related medication at the earliest from your endocrinology expert.
Ovarian cysts can be treated with
laparoscopy or open surgery, depending on the choice of your gynecologist.
To remove ovaries or to get the cyst removed is surgical decision.
Please get CA 125, CEA,
BETA HCG,LDH levels done before surgery. All these help as malignant
tumor markers for
ovarian cancer. If these are negative, then you need not worry.
Secondly, ovarian cyst surgery has no role on the thyroid gland function. Other way round , treatment of thyroid disorders might cause reduction in the ovarian cyst.
I hope this answer helps you.
Thanks.
Dr. Purushottam Neurgaonkar